Breakfast Egg Muffins

Breakfast Egg Muffins are fluffy, protein-packed mini omelets baked in a muffin tin for a quick, satisfying start to any morning.

Picture the golden edges crisping as they bake, the kitchen filling with the cozy smell of savory eggs, peppers, and melty cheese each bite warm, tender, and just a little bit dreamy. I first made these on a busy New York morning, chasing that feeling of slow, comforting breakfasts from home.

Breakfast Egg Muffins cooling on a white marble surface, showing golden tops and colorful veggie mix.
Golden Breakfast Egg Muffins ready for your morning table.

What makes these special is how endlessly customizable they are you can toss in your favorite veggies, swap cheeses, or even make them dairy-free without fuss. Whip up a batch and you’ll always have a nourishing breakfast ready, making every day feel just a bit more cared for as we dive right into the recipe.

Why You’ll Love These Muffins

  • Warm, fluffy comfort: Each bite has a soft, cloud-like texture with a gentle golden edge like a morning hug you can eat.
  • Perfect for busy mornings: These little breakfast egg muffins keep well and are easy to grab from the fridge, so breakfast can be peaceful even on hectic days.
  • Endlessly customizable: Add your favorite veggies, swap in different cheeses, or mix in herbs it’s a choose-your-own-adventure every time.
  • Kid- and grown-up-approved: The cozy flavors and bite-sized shape make them loved by all ages (especially with melty cheese or colorful veggies peeking through).
  • Make ahead and feel confident: You’ll step into the day knowing a nourishing, homemade breakfast is always waiting for you.

Ingredients You’ll Need

  • Eggs: The heart and soul of these muffins, giving you that classic tender, fluffy texture that feels like a warm morning hug.
  • Red Bell Pepper: Adds a pop of color and sweet, juicy crunch in every bite. It brightens up both the flavor and look of your muffins.
  • Scallions: Mild onion flavor with a fresh, herby vibe. They tuck gently into the eggs and balance the richness of the cheese.
  • Feta Cheese: Tangy, creamy crumbles that melt beautifully and lend a cozy Mediterranean touch.
  • All-Purpose Flour: Just a spoonful creates a lighter crumb, almost souffle-like, and helps everything hold together.
  • Baking Powder: Gives these muffins a subtle lift, making them airy instead of dense.
  • Fresh Garlic: A whisper of garlic wakes up the flavor and brings true comfort.
  • Extra-Virgin Olive Oil: Used to grease the pan, it ensures golden edges and an extra layer of richness.
  • Favorite Mix-ins: Don’t be shy stir in spinach, cooked bacon, mushrooms, or fresh herbs for even more coziness.
  • Dairy-Free or Vegetarian Swaps: Use plant-based cheese or leave cheese out entirely; pile in extra veggies or your favorite meat-free breakfast sausage.

How to Make Breakfast Egg Muffins

  1. Prep Your Pan & Veggies
    Start by greasing a muffin tin generously with olive oil. It’s your ticket to muffins that pop right out with golden, craggy edges. Scatter the diced red bell pepper and chopped scallions evenly into each well for a happy pop of color in every bite.
  1. Whisk the Creamy Egg Base
    Crack the eggs into a roomy bowl, add a bit of grated garlic, salt, and black pepper. Sprinkle in the flour and a pinch of baking powder. Whisk until the eggs are frothy and just blended don’t worry if there are a few floury wisps left; it all bakes together.
  2. Assemble & Add Cheese
    Pour your egg mixture over the veggies, filling each cup nearly to the top. Sprinkle crumbled feta over each this is where the real magic (and melty pockets) happen.
  3. Bake to Puffy, Golden Goodness
    Slide the pan into your oven and let the magic happen. The muffins will puff, edges will crisp up, and your kitchen will fill with cozy, savory aromas.
  4. Cool & Release
    Allow muffins to cool in the tin before removing. If you’re feeling adventurous, peek at Breakfast Egg Muffins recipe variations for ideas to mix things up next time!

Tips for the Best Results

  • Aim for golden edges: Generously oil the muffin tin (even if it’s nonstick!) and let the muffins bake undisturbed until their edges look deeply golden and slightly puffed. That gentle crispness is such a treat with tender eggs.
  • Prevent sogginess: Sauté or pat dry any watery veggies before adding them. Nobody likes a mushy muffin! Also, let muffins cool a few minutes in the tin this avoids steamy bottoms.
  • No overbaking allowed: Pull the muffins as soon as the centers are just set and spring back gently to the touch. Overbaking leads to rubbery texture and less of that creamy, cozy feeling.
  • Batch and portion smart: Once cooled, wrap each muffin individually or store in a single layer. They’re ready for a quick breakfast dash, lunchbox moment, or snack on the go no mess, no fuss.

Variations You Can Try

Feta & Spinach Classic: If you love that Mediterranean vibe, swap in a generous handful of baby spinach with the sautéed peppers and finish with crumbled feta on top just like my Spinach Egg Bake that’s always a brunch crowd-pleaser.

Ham & Cheddar for Cozy Comfort: Stir in diced ham and a sprinkle of sharp cheddar for a nostalgic, diner-style bite your family will adore.

Mushroom & Herbs: Add a tumble of earthy sautéed mushrooms, and finish with fresh thyme or chives for an elegant, savory muffin that’s weekend brunch-worthy.

Vegetarian & Dairy-Free: Skip the cheese or use your favorite plant-based alternative, and pile in chopped kale, tomatoes, or shredded zucchini.

Meat-Lover’s Dream: Try cooked breakfast sausage crumbles, crispy bacon, or even pepperoni for ultra-savory protein-packed muffins.

Seasonal Inspiration: In spring, toss in tender asparagus or fresh peas; summer calls for sweet corn and basil; fall loves roasted butternut squash and sage. Let your farmer’s market haul or what’s in your crisper drawer inspire your mix-ins!

Variety of Breakfast Egg Muffins with mix-ins like spinach, cheese, and ham displayed on parchment paper.
Assorted Breakfast Egg Muffins with favorite mix-ins.

How to Store Leftovers

  • Fridge Storage: Let your Breakfast Egg Muffins cool completely, then pop them in an airtight container. They’ll stay tender and flavorful in your fridge for several days, ready for grab-and-go mornings.
  • Freezer-Friendly: These muffins freeze beautifully. Wrap them individually or stack with parchment in a freezer bag to keep them from sticking together. They’ll give you a cozy breakfast even on your busiest week.
  • Reheating Tips: For the best texture, reheat gently in the microwave or a low oven. Adding a damp paper towel on top keeps them soft and prevents drying out.
  • Staying Fresh: To keep that just-baked taste, only reheat what you plan to eat. The rest will wait patiently, tasting fresh for days with no sogginess.

How to Serve This

  • Classic breakfast plate: Nestle a couple of warm Breakfast Egg Muffins next to a handful of juicy berries and a slice of buttered toast for a morning that feels both special and effortless.
  • Brunch party dream: Arrange on a platter with flaky Chocolate Croissant Breakfast Bake or golden Buttermilk Pumpkin Waffles to make your table look as cozy as a weekend morning at Grandma’s.
  • On-the-go snack: Tuck a muffin or two into a lunchbox along with carrot sticks and a small fruit cup perfect for picnics or busy workdays.
  • Cozy, balanced meal: Pair with a swirl of creamy Greek yogurt or your favorite Bowl Baked Oatmeal for soft, sweet contrast.
  • Pancake breakfast: Stack on a plate with Greek Yogurt Pancakes or Oat Flour Pancakes for a morning that truly feels like home.
Breakfast Egg Muffins cooling on a white marble surface, showing golden tops and colorful veggie mix.
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Breakfast Egg Muffins

These breakfast egg muffins are fluffy, easy to customize, and perfect for meal prep! Packed with peppers, scallions, and creamy feta, they’re a grab-and-go breakfast hit for busy mornings or cozy brunches.
Prep Time 15 minutes
Cook Time 24 minutes
Total Time 39 minutes
Servings: 12 muffins
Course: Breakfast, Brunch
Cuisine: American
Calories: 90

Ingredients
  

  • Extra-virgin olive oil, for greasing the pan
  • 2 cups diced red bell pepper (about 2 medium)
  • 0.5 cup chopped scallions
  • 9 large eggs
  • 1 garlic clove, grated
  • 0.5 teaspoon heaping sea salt
  • Freshly ground black pepper, to taste
  • 3 tablespoons all-purpose flour
  • 0.75 teaspoon baking powder
  • 0.33 cup crumbled feta cheese

Equipment

  • muffin tin
  • mixing bowl
  • whisk
  • measuring cups and spoons

Method
 

  1. Preheat the oven to 350°F.
  2. Grease a nonstick muffin tin with olive oil and evenly divide the peppers and scallions among the muffin cups.
  3. In a large bowl, whisk the eggs. Add garlic, salt, and several grinds of pepper, then sprinkle the flour and baking powder on top. Whisk well to combine (it’s ok if a few clumps remain).
  4. Divide the egg mixture evenly into the muffin cups, using about a scant 1/4 cup for each. Sprinkle the feta on top.
  5. Bake for 22 to 24 minutes, or until the eggs are set. Let cool before removing from the pan.

Nutrition

Calories: 90kcalCarbohydrates: 2gProtein: 6gFat: 6gSaturated Fat: 2gPolyunsaturated Fat: 0.5gMonounsaturated Fat: 2gCholesterol: 140mgSodium: 190mgPotassium: 100mgSugar: 1gVitamin A: 500IUVitamin C: 30mgCalcium: 60mgIron: 1mg

Notes

Generously grease your muffin tin to ensure golden, crispy edges and easy release. Feel free to add in favorite mix-ins like spinach, mushrooms, or cooked bacon. These muffins freeze well—reheat gently in a microwave or low oven for fresh, fluffy results. Avoid overbaking for the best creamy texture.

Tried this recipe?

Let us know how it was!

Can I make breakfast egg muffins ahead of time?

Absolutely! I love making these egg muffins the night before just let them cool, then pop them in the fridge. Mornings feel so much cozier and less rushed when all you need to do is reheat for a quick, warm breakfast.

What vegetables work best in breakfast egg muffins?

Go for color and crunch! Red bell pepper, spinach, mushrooms, and scallions all bring a lovely mix of sweet, earthy, and fresh flavors. Just remember to sauté or blot especially watery veggies, so your muffins stay fluffy and never soggy.

How do I prevent my muffins from sticking to the pan?

Don’t skimp on the olive oil give each muffin cup a good swipe, even if you’re using a nonstick tin. You’ll be rewarded with beautifully golden edges and muffins that pop right out without any fuss or torn bottoms.

Can I freeze breakfast egg muffins?

Yes, you can! Once cooled, wrap muffins individually or separate with parchment in a freezer bag. They reheat beautifully and taste just as comforting as the day you baked them perfect for those mornings that need a little extra warmth and ease.

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